AI Research Scientist II - Office of the CTO

Summary

The Allen Institute is dedicated to unlocking the complexities of bioscience to improve human health. They are seeking an AI Research Scientist II to develop large AI/ML models for biology, working collaboratively across various teams to enhance understanding of biological systems through advanced data analysis techniques.

Responsibilities

• Develop and deploy large scale ML models that deepen our understanding of complex biological systems in health and disease by incorporating diverse biological datatypes, such as multi-omics data, microscopy data, in vivo and behavioral imaging data, electrophysiological data, and/or clinical data. Using ML methods to tokenize and embed biological data for ML models and subsequently analyze ML embeddings for benchmarking and other biological tasks
• Help to establish community standards for scalability in developing, disseminating, and evaluating AI/ML/computational methods for scientific problems across the model lifecycle by testing and documenting best practices and sharing with the community
• Collaborate with teams of scientists, computational biologists, and software engineers within the Allen Institute and external partners to help drive large scale AI/ML models, from best code practices to scientific impact
• Collaborate with software engineers to build state-of-the-art engineering infrastructure at the Allen Institute to support large scale AI/ML research and applications, such as methods for caching and processing petabyte scale data across multiple networked GPU nodes on cloud, this person will build a research grade large scale ML infrastructure that will be hardened by SWE
• Participate in institute-wide initiatives, workshops, and seminars to promote cross-disciplinary collaboration and knowledge sharing
• Support the promotion of open science through publishing papers and open-source code

Skills

• PhD in Computer Science, Applied Mathematics, Computational Biology, Statistics, Biostatistics or similar field; or equivalent combination of degree and experience
• Minimum of 2 years postdoctoral / work experience
• Demonstrated ability to design, implement and apply AI/ML models for the analysis of large-scale biological data
• 2 - 5 years of experience developing and applying ML methods
• Strong publication record of innovative scientific accomplishments (both individual and team)
• Expertise in Python-based ML libraries and frameworks such as PyTorch, Jax, Pyro, NumPy, and Pandas. Solid understanding of statistical analysis, data preprocessing, feature selection, and model evaluation techniques
• Experience building data pipelines to make biological data ML-ready, pipeline for model training and evaluation. Knowledge of data preprocessing, normalization, and integration techniques specific to biological and clinical datasets
• Experience with data visualization and presentation of complex biological findings to both technical and non-technical audiences
• Strong problem-solving skills and ability to develop innovative computational approaches to address complex biological questions

Qualifications

Must Haves

• PhD in Computer Science, Applied Mathematics, Computational Biology, Statistics, Biostatistics or similar field; or equivalent combination of degree and experience
• Minimum of 2 years postdoctoral / work experience
• Demonstrated ability to design, implement and apply AI/ML models for the analysis of large-scale biological data

Nice to Haves

• 2 - 5 years of experience developing and applying ML methods
• Strong publication record of innovative scientific accomplishments (both individual and team)
• Expertise in Python-based ML libraries and frameworks such as PyTorch, Jax, Pyro, NumPy, and Pandas. Solid understanding of statistical analysis, data preprocessing, feature selection, and model evaluation techniques
• Experience building data pipelines to make biological data ML-ready, pipeline for model training and evaluation. Knowledge of data preprocessing, normalization, and integration techniques specific to biological and clinical datasets
• Experience with data visualization and presentation of complex biological findings to both technical and non-technical audiences
• Strong problem-solving skills and ability to develop innovative computational approaches to address complex biological questions

Benefits

• **Please note, this opportunity may offer work visa sponsorship**
• Employees (and their families) are eligible to enroll in benefits per eligibility rules outlined in the Allen Institute’s Benefits Guide.
• Medical
• Dental
• Vision
• Basic life insurance
• Eligible to enroll in the Allen Institute’s 401k plan
• Paid time off is also available as outlined in the Allen Institutes Benefits Guide.
• Relocation assistance
• May offer work visa sponsorship