Bioinformatics Analyst II

Summary

Theiagen Genomics is a technology company focused on public health and pathogen genomics solutions. The Bioinformatics Analyst II supports the development, maintenance, and expansion of bioinformatics solutions, leads training and subject matter expert support for external partners, improves internal processes, collaborates with development teams, and mentors junior team members.

Responsibilities

• Lead the development and delivery of Theiagen training workshops, managing--with minimal supervision--all aspects from material preparation to logistics and communication with external partners
• Lead SME support for external partners, overseeing activities to support genomic investigations (e.g., pathogen outbreaks) to ensure timely and effective solutions that address partner needs
• Ensure the adherence to, and continuous improvement of, internal training and support practices
• Serve as a bridge between partners and the development team, ensuring that partner needs are translated and implemented effectively
• Regularly communicate with their Public Health Team Lead to summarize critical information, ensuring alignment on project statuses, challenges, and milestones for informed decision-making
• Mentor junior members of the team, fostering a culture of learning and technical excellence within the team

Skills

• Masters or doctoral degree in bioinformatics, biostatistics, computer science, microbiology, molecular biology, or related field
• Demonstrated expertise applying bioinformatics tools and workflows to answer complex biological questions, particularly in pathogen genomics
• Advanced proficiency in using bioinformatics tools for tasks such as genome assembly, annotation, taxonomic classification, and antimicrobial resistance detection
• Deep knowledge of statistical approaches and bioinformatics pipelines for analyzing next-generation sequencing (NGS) data
• Proficiency with genomic epidemiology methods, including phylogenetics, outbreak investigation tools, and MLST typing
• Proven ability to lead and manage multiple projects independently or within a collaborative team environment
• Excellent written and verbal communication, with experience presenting technical results to diverse audiences
• Effective judgment and advanced problem-solving skills with minimal supervision
• Strong motivation and demonstrated impact in public health initiatives
• Comprehensive knowledge of public health laboratory processes and workflows, including validation and verification of bioinformatics workflows for decision-making
• Expertise in interpreting bioinformatics results and providing actionable public health insights
• Significant experience analyzing pathogen genomics datasets for public health applications (e.g., SARS-CoV-2, Mycobacterium tuberculosis, antimicrobial resistance, or HAIs)
• Advanced experience with cloud-based bioinformatics platforms (e.g., Terra.bio, Galaxy) and workflow orchestration tools (e.g., Nextflow, WDL, or Snakemake)
• Hands-on expertise in using visualization and reporting tools to clearly communicate results to stakeholders
• Proficiency in shell scripting and working in UNIX/Linux environments
• Leadership experience mentoring junior team members and fostering technical excellence

Qualifications

Must Haves

• Masters or doctoral degree in bioinformatics, biostatistics, computer science, microbiology, molecular biology, or related field
• Demonstrated expertise applying bioinformatics tools and workflows to answer complex biological questions, particularly in pathogen genomics
• Advanced proficiency in using bioinformatics tools for tasks such as genome assembly, annotation, taxonomic classification, and antimicrobial resistance detection
• Deep knowledge of statistical approaches and bioinformatics pipelines for analyzing next-generation sequencing (NGS) data
• Proficiency with genomic epidemiology methods, including phylogenetics, outbreak investigation tools, and MLST typing
• Proven ability to lead and manage multiple projects independently or within a collaborative team environment
• Excellent written and verbal communication, with experience presenting technical results to diverse audiences
• Effective judgment and advanced problem-solving skills with minimal supervision
• Strong motivation and demonstrated impact in public health initiatives

Nice to Haves

• Comprehensive knowledge of public health laboratory processes and workflows, including validation and verification of bioinformatics workflows for decision-making
• Expertise in interpreting bioinformatics results and providing actionable public health insights
• Significant experience analyzing pathogen genomics datasets for public health applications (e.g., SARS-CoV-2, Mycobacterium tuberculosis, antimicrobial resistance, or HAIs)
• Advanced experience with cloud-based bioinformatics platforms (e.g., Terra.bio, Galaxy) and workflow orchestration tools (e.g., Nextflow, WDL, or Snakemake)
• Hands-on expertise in using visualization and reporting tools to clearly communicate results to stakeholders
• Proficiency in shell scripting and working in UNIX/Linux environments
• Leadership experience mentoring junior team members and fostering technical excellence

Benefits

• Paid Time Off
• Fully remote work (Must be able to provide proof of ability to work in the US upon hire-does not offer sponsorship at this time)
• Company supplied computer
• Medical, Dental, Vision coverage/stipend
• 401(k) with company match
• Flexible Spending Accounts
• Employee Assistance Program
• Employee Discount Program